PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505556.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 331aa    MW: 37772.4 Da    PI: 7.873
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505556.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.9e-08100122326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      e C++++r G C +Gd C F+Hg
  XP_004505556.1 100 GEVCPDYRR-GNCERGDACEFSHG 122
                     689******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.39997124IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-697123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-598122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5100124IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-6101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258132156IPR000571Zinc finger, CCCH-type
SMARTSM003562.8132155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSGILCEEQQ KLLLSLKKSL TLRDKIDIDN TPPRKLLARR QPAADMLPDE DPYSSDQFRM  60
YEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPLKYQYSG EVCPDYRRGN CERGDACEFS  120
HGVFECWLHP SRYRTEACKD GKNCKRKICF FAHTPRQLRV LLLTPPQHNN NNNNNNKKSH  180
NNNNCCSYCH CCSANSSPTS TLFSGSHFSK SNSPPLSPSS SSSSPTTLSR YSKNMHVLNE  240
LMRSIELESA LNSPVSATKL PWLDVNVSDQ YSPFGCEDHS QNHVIDVLPT MNCGKYYSSD  300
DAEFVREQRK VVGDDDVIAV PDFGWVNDLL M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505556.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
TrEMBLG7JTW11e-112G7JTW1_MEDTR; Uncharacterized protein
STRINGGLYMA06G44440.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-68C3H family protein